Installation and Setup

System requirements

Ubuntu >16.04
JDK version 8
Python version 3.8

Install from source code

Before installing from source, make sure to have the following dependencies:

Installation can be done with the following commands:

git clone https://github.com/bio-ontology-research-group/mowl.git

cd mowl

conda env create -f environment.yml
conda activate mowl

cd mowl
./build_jars.sh

Since mOWL needs to bind the Java Virtual Machine, the last line will generate the necessary jar files.

Install from PyPi

PyPi installation is on testing phase and can be done as follows:

pip install mowl-borg

Install from Conda

conda install -c ferzcam mowl-borg