Installation and Setup

mOWL runs on Linux and MAC OS X systems. The library has not been tested on Windows and it could not work properly due to Java compatibility.

System requirements

JDK version 17
Python version 3.8, 3.9, 3.10, 3.11
Conda version >= 4.x.x

Python requirements

Gensim >= 4.x.x
PyTorch >= 1.12.x
PyKEEN >= 1.10.1

Install from source code

Before installing from source, make sure to meet the dependencies.

Installation can be done with the following commands:

git clone https://github.com/bio-ontology-research-group/mowl.git

cd mowl

conda env create -f envs/environment_3_8.yml
conda activate mowl

./build_jars.sh

python setup.py install

Since mOWL needs to bind the Java Virtual Machine, the last line will generate the necessary .jar files.

Install from PyPi

pip install mowl-borg