mowl.datasets

Dataset constructors

Classes

ALCDataset(ontology, dataset[, device])

This class provides data-related methods to work with \(\mathcal{ALC}\) description logic language.

Dataset(ontology[, validation, testing])

This class represents an mOWL dataset.

ELDataset(ontology[, class_index_dict, ...])

This class provides data-related methods to work with \(\mathcal{EL}\) description logic language.

OWLClasses(collection)

Iterable for org.semanticweb.owlapi.model.OWLClass

OWLIndividuals(collection)

Iterable for org.semanticweb.owlapi.model.OWLIndividual

OWLObjectProperties(collection)

Iterable for org.semanticweb.owlapi.model.OWLObjectProperty

PathDataset(ontology_path[, ...])

Loads the dataset from ontology documents.

RemoteDataset(url[, data_root])

Loads the dataset from a remote URL.

TarFileDataset(tarfile_path, *args, **kwargs)

Loads the dataset from a tar file.

Class Inheritance Diagram

Inheritance diagram of mowl.datasets.alc.alc_dataset.ALCDataset, mowl.datasets.base.Dataset, mowl.datasets.el.el_dataset.ELDataset, mowl.datasets.base.OWLClasses, mowl.datasets.base.OWLIndividuals, mowl.datasets.base.OWLObjectProperties, mowl.datasets.base.PathDataset, mowl.datasets.base.RemoteDataset, mowl.datasets.base.TarFileDataset


Built-in datasets

Classes

GOSubsumptionDataset()

Dataset for subsumption prediction in the Gene Ontology.

FoodOnSubsumptionDataset()

Dataset for subsumption prediction in the Gene Ontology.

PPIYeastDataset([url])

Dataset containing protein-protein interactions in yeast.

PPIYeastSlimDataset()

Reduced version of PPIYeastDataset.

PPIHumanDataset([url])

Dataset containing protein-protein interactions in human.

GDADataset([url])

Abstract class for gene-disease association datasets.

GDAHumanDataset()

Dataset containing gene-disease associations in human.

GDAHumanELDataset()

This dataset is a reduced version of GDAHumanDataset.

GDAMouseDataset()

Dataset containing gene-disease associations in mouse.

GDAMouseELDataset()

This dataset is a reduced version of GDAMouseDataset.

GDADatasetV2([url])

Gene--Disease Association Dataset version 2.

GDADatasetV2EL([url])

HPIDataset([url])

FamilyDataset([url])

This dataset represents a family domain.

Class Inheritance Diagram

Inheritance diagram of mowl.datasets.builtin.subsumption.GOSubsumptionDataset, mowl.datasets.builtin.subsumption.FoodOnSubsumptionDataset, mowl.datasets.builtin.ppi_yeast.PPIYeastDataset, mowl.datasets.builtin.ppi_yeast.PPIYeastSlimDataset, mowl.datasets.builtin.ppi_yeast.PPIHumanDataset, mowl.datasets.builtin.gda.GDADataset, mowl.datasets.builtin.gda.GDAHumanDataset, mowl.datasets.builtin.gda.GDAHumanELDataset, mowl.datasets.builtin.gda.GDAMouseDataset, mowl.datasets.builtin.gda.GDAMouseELDataset, mowl.datasets.builtin.gda2.GDADatasetV2, mowl.datasets.builtin.gda2.GDADatasetV2EL, mowl.datasets.builtin.hpi.HPIDataset, mowl.datasets.builtin.family.FamilyDataset