PPIYeastDataset

class mowl.datasets.builtin.PPIYeastDataset(url=None)

Bases: RemoteDataset

Dataset containing protein-protein interactions in yeast.

The data used for this dataset consists of the Gene Ontology released on 20-10-2021 and protein interaction data found in String Database version 11.5. Protein interaction data was randomly split 90:5:5 across training, validation and testing ontologies and Gene Ontology functional annotations of proteins is part of the training ontology only. Protein interactions are represented as an axiom of the form \(protein_1 \sqsubseteq interacts\_with .protein_2.\)

This dataset was used as a benchmark in [chen2025].

Attributes Summary

evaluation_classes

Classes that are used in evaluation

Methods Summary

get_evaluation_property()

Attributes Documentation

evaluation_classes

Classes that are used in evaluation

Changed in version 0.4.0: Return pair of classes for evaluation

Methods Documentation

get_evaluation_property()