MOWL
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Get Started
Installation and Setup
Datasets
Ontology management
OWLAPI
mOWL model
Ontology to text
Ontologies to graphs
Embedding the EL language
Evaluating the embeddings
Visualization
Paper study with mOWL
FAQ
Common errors in mOWL
API reference
mowl.base_models
mowl.corpus
mowl.datasets
mowl.evaluation
mowl.models
mowl.nn
mowl.ontology
mowl.owlapi
mowl.projection
mowl.walking
mowl.reasoning
mowl.visualization
Appendix
References
MOWL
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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V
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W
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Z
_
__call__() (mowl.evaluation.AxiomsRankBasedEvaluator method)
A
add_axioms() (mowl.base_models.EmbeddingELModel method)
(mowl.base_models.Model method)
(mowl.datasets.Dataset method)
(mowl.models.GraphPlusPyKEENModel method)
(mowl.models.RandomWalkPlusW2VModel method)
(mowl.models.SyntacticPlusW2VModel method)
ALCDataset (class in mowl.datasets)
as_pykeen() (mowl.projection.Edge static method)
astuple() (mowl.projection.Edge method)
AxiomsRankBasedEvaluator (class in mowl.evaluation)
B
BoxSquaredELModule (class in mowl.nn)
C
CategoricalProjector (class in mowl.projection)
check_owl_type() (mowl.datasets.OWLClasses method)
(mowl.datasets.OWLIndividuals method)
(mowl.datasets.OWLObjectProperties method)
class_embeddings (mowl.base_models.EmbeddingELModel attribute)
(mowl.base_models.Model attribute)
(mowl.models.GraphPlusPyKEENModel attribute)
(mowl.models.RandomWalkPlusW2VModel attribute)
(mowl.models.SyntacticPlusW2VModel attribute)
class_index_dict (mowl.base_models.Model attribute)
(mowl.datasets.ELDataset attribute)
class_reg() (mowl.nn.ELEmModule method)
class_to_id (mowl.datasets.ALCDataset attribute)
(mowl.datasets.Dataset attribute)
classes (mowl.datasets.Dataset attribute)
compute_axiom_rank() (mowl.evaluation.AxiomsRankBasedEvaluator method)
corpus (mowl.base_models.SyntacticModel attribute)
corpus_filepath (mowl.base_models.SyntacticModel attribute)
create_class() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_class_assertion() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_complement_of() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_disjoint_classes() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_equivalent_classes() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_from_triples() (in module mowl.ontology.create)
create_individual() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_object_all_values_from() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_object_intersection_of() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_object_property() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_object_property_assertion() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_object_some_values_from() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_object_union_of() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_ontology() (mowl.owlapi.adapter.OWLAPIAdapter method)
create_subclass_of() (mowl.owlapi.adapter.OWLAPIAdapter method)
D
data_factory (mowl.owlapi.adapter.OWLAPIAdapter property)
Dataset (class in mowl.datasets)
DeepWalk (class in mowl.walking)
DL2VecProjector (class in mowl.projection)
dst (mowl.projection.Edge attribute)
E
Edge (class in mowl.projection)
edges (mowl.base_models.GraphModel attribute)
ELBoxEmbeddings (class in mowl.models)
ELBoxGDA (class in mowl.models)
ELBoxModule (class in mowl.nn)
ELBoxPPI (class in mowl.models)
ELDataset (class in mowl.datasets)
ELEmbeddings (class in mowl.models)
ELEmGDA (class in mowl.models)
ELEmModule (class in mowl.nn)
ELEmPPI (class in mowl.models)
ELModule (class in mowl.nn)
ELNormalizer (class in mowl.ontology.normalize)
EmbeddingELModel (class in mowl.base_models)
embeddings_to_dict() (mowl.evaluation.Evaluator method)
EmbeddingsRankBasedEvaluator (class in mowl.evaluation)
eval_fn() (mowl.base_models.Model method)
eval_method() (mowl.models.ELBoxEmbeddings method)
(mowl.models.ELEmbeddings method)
(mowl.models.ELEmPPI method)
evaluate() (mowl.evaluation.Evaluator method)
(mowl.evaluation.RankBasedEvaluator method)
evaluate_ppi() (mowl.models.ELBoxPPI method)
(mowl.models.ELEmPPI method)
evaluation_classes (mowl.datasets.builtin.FamilyDataset attribute)
(mowl.datasets.builtin.GDADataset attribute)
(mowl.datasets.builtin.PPIYeastDataset attribute)
(mowl.datasets.Dataset attribute)
Evaluator (class in mowl.evaluation)
extract_and_save_annotation_corpus() (in module mowl.corpus.base)
extract_and_save_axiom_corpus() (in module mowl.corpus.base)
extract_annotation_corpus() (in module mowl.corpus.base)
extract_axiom_corpus() (in module mowl.corpus.base)
F
FamilyDataset (class in mowl.datasets.builtin)
filler (mowl.ontology.normalize.GCI2 property)
(mowl.ontology.normalize.GCI3 property)
filter_head_tail_data() (mowl.evaluation.RankBasedEvaluator method)
fmetrics (mowl.evaluation.AxiomsRankBasedEvaluator attribute)
forward() (mowl.nn.ELModule method)
from_pretrained() (mowl.base_models.EmbeddingELModel method)
(mowl.base_models.Model method)
(mowl.models.GraphPlusPyKEENModel method)
(mowl.models.RandomWalkPlusW2VModel method)
(mowl.models.SyntacticPlusW2VModel method)
G
GCI (class in mowl.ontology.normalize)
GCI0 (class in mowl.ontology.normalize)
GCI0_BOT (class in mowl.ontology.normalize)
gci0_bot_dataset (mowl.datasets.ELDataset attribute)
gci0_bot_loss() (mowl.nn.BoxSquaredELModule method)
(mowl.nn.ELBoxModule method)
(mowl.nn.ELEmModule method)
(mowl.nn.ELModule method)
gci0_dataset (mowl.datasets.ELDataset attribute)
gci0_loss() (mowl.nn.BoxSquaredELModule method)
(mowl.nn.ELBoxModule method)
(mowl.nn.ELEmModule method)
(mowl.nn.ELModule method)
GCI1 (class in mowl.ontology.normalize)
GCI1_BOT (class in mowl.ontology.normalize)
gci1_bot_dataset (mowl.datasets.ELDataset attribute)
gci1_bot_loss() (mowl.nn.BoxSquaredELModule method)
(mowl.nn.ELBoxModule method)
(mowl.nn.ELEmModule method)
(mowl.nn.ELModule method)
gci1_dataset (mowl.datasets.ELDataset attribute)
gci1_loss() (mowl.nn.BoxSquaredELModule method)
(mowl.nn.ELBoxModule method)
(mowl.nn.ELEmModule method)
(mowl.nn.ELModule method)
GCI2 (class in mowl.ontology.normalize)
gci2_dataset (mowl.datasets.ELDataset attribute)
gci2_loss() (mowl.nn.BoxSquaredELModule method)
(mowl.nn.ELBoxModule method)
(mowl.nn.ELEmModule method)
(mowl.nn.ELModule method)
GCI3 (class in mowl.ontology.normalize)
GCI3_BOT (class in mowl.ontology.normalize)
gci3_bot_dataset (mowl.datasets.ELDataset attribute)
gci3_bot_loss() (mowl.nn.BoxSquaredELModule method)
(mowl.nn.ELBoxModule method)
(mowl.nn.ELEmModule method)
(mowl.nn.ELModule method)
gci3_dataset (mowl.datasets.ELDataset attribute)
gci3_loss() (mowl.nn.BoxSquaredELModule method)
(mowl.nn.ELBoxModule method)
(mowl.nn.ELEmModule method)
(mowl.nn.ELModule method)
GDADataset (class in mowl.datasets.builtin)
GDAHumanDataset (class in mowl.datasets.builtin)
GDAHumanELDataset (class in mowl.datasets.builtin)
GDAMouseDataset (class in mowl.datasets.builtin)
GDAMouseELDataset (class in mowl.datasets.builtin)
generate_corpus() (mowl.base_models.SyntacticModel method)
generate_points() (mowl.visualization.base.TSNE method)
get_axiom_pattern() (mowl.datasets.ALCDataset method)
get_axiom_vector() (mowl.datasets.ALCDataset method)
get_datasets() (mowl.datasets.ALCDataset method)
get_embeddings() (mowl.models.ELBoxEmbeddings method)
(mowl.models.ELEmbeddings method)
get_entities() (mowl.ontology.normalize.GCI static method)
(mowl.ontology.normalize.GCI0 method)
(mowl.ontology.normalize.GCI1 method)
(mowl.ontology.normalize.GCI2 method)
(mowl.ontology.normalize.GCI3 method)
get_entities_and_relations() (mowl.projection.Edge static method)
get_evaluation_property() (mowl.datasets.builtin.GDADataset method)
(mowl.datasets.builtin.PPIYeastDataset method)
get_gci_datasets() (mowl.datasets.ELDataset method)
get_grouped_axioms() (mowl.datasets.ALCDataset method)
get_loss_function() (mowl.nn.ELModule method)
get_obj_prop_assertion_data() (mowl.datasets.ALCDataset method)
getEntitiesAndRelations() (mowl.projection.Edge static method)
graph_node_to_id (mowl.base_models.GraphModel attribute)
graph_relation_to_id (mowl.base_models.GraphModel attribute)
GraphModel (class in mowl.base_models)
GraphPlusPyKEENModel (class in mowl.models)
grouped_axioms (mowl.datasets.ALCDataset attribute)
H
head_entities (mowl.models.ELBoxEmbeddings attribute)
(mowl.models.ELEmbeddings attribute)
I
individual_embeddings (mowl.base_models.EmbeddingELModel attribute)
(mowl.base_models.Model attribute)
(mowl.models.GraphPlusPyKEENModel attribute)
(mowl.models.RandomWalkPlusW2VModel attribute)
(mowl.models.SyntacticPlusW2VModel attribute)
individual_index_dict (mowl.base_models.Model attribute)
individual_to_id (mowl.datasets.ALCDataset attribute)
(mowl.datasets.Dataset attribute)
individuals (mowl.datasets.Dataset attribute)
infer_disjoint_class_axioms() (mowl.reasoning.base.MOWLReasoner method)
infer_equivalent_class_axioms() (mowl.reasoning.base.MOWLReasoner method)
infer_subclass_axioms() (mowl.reasoning.base.MOWLReasoner method)
init_embeddings() (mowl.nn.BoxSquaredELModule method)
init_module() (mowl.base_models.EmbeddingELModel method)
(mowl.models.ELBoxEmbeddings method)
(mowl.models.ELEmbeddings method)
insert_annotations() (in module mowl.ontology.extend)
K
kge_method (mowl.base_models.KGEModel attribute)
KGEModel (class in mowl.base_models)
L
labels (mowl.datasets.Dataset attribute)
left_subclass (mowl.ontology.normalize.GCI1 property)
load() (mowl.datasets.ALCDataset method)
(mowl.datasets.ELDataset method)
load_best_model() (mowl.models.ELBoxEmbeddings method)
(mowl.models.ELEmbeddings method)
load_data() (mowl.evaluation.Evaluator method)
load_eval_data() (mowl.models.ELBoxEmbeddings method)
(mowl.models.ELEmbeddings method)
load_training_scores() (mowl.evaluation.RankBasedEvaluator method)
M
metrics (mowl.evaluation.AxiomsRankBasedEvaluator attribute)
Model (class in mowl.base_models)
model_filepath (mowl.base_models.Model attribute)
ModelRankBasedEvaluator (class in mowl.evaluation)
module
mowl.base_models
mowl.corpus.base
mowl.datasets
mowl.datasets.builtin
mowl.evaluation
mowl.models
mowl.nn
mowl.ontology.create
mowl.ontology.extend
mowl.ontology.normalize
mowl.owlapi.adapter
mowl.owlapi.defaults
mowl.projection
mowl.reasoning.base
mowl.visualization.base
mowl.walking
mowl.base_models
module
mowl.corpus.base
module
mowl.datasets
module
mowl.datasets.builtin
module
mowl.evaluation
module
mowl.models
module
mowl.nn
module
mowl.ontology.create
module
mowl.ontology.extend
module
mowl.ontology.normalize
module
mowl.owlapi.adapter
module
mowl.owlapi.defaults
module
mowl.projection
module
mowl.reasoning.base
module
mowl.visualization.base
module
mowl.walking
module
MOWLReasoner (class in mowl.reasoning.base)
N
Node2Vec (class in mowl.walking)
normalize() (mowl.ontology.normalize.ELNormalizer method)
O
object_properties (mowl.datasets.Dataset attribute)
object_property (mowl.ontology.normalize.GCI2 property)
(mowl.ontology.normalize.GCI3 property)
object_property_embeddings (mowl.base_models.EmbeddingELModel attribute)
(mowl.base_models.Model attribute)
(mowl.models.GraphPlusPyKEENModel attribute)
(mowl.models.RandomWalkPlusW2VModel attribute)
(mowl.models.SyntacticPlusW2VModel attribute)
object_property_index_dict (mowl.base_models.Model attribute)
(mowl.datasets.ELDataset attribute)
object_property_to_id (mowl.datasets.ALCDataset attribute)
(mowl.datasets.Dataset attribute)
ontology (mowl.datasets.Dataset attribute)
OWL2VecStarProjector (class in mowl.projection)
owl_axiom (mowl.ontology.normalize.GCI property)
owl_manager (mowl.owlapi.adapter.OWLAPIAdapter property)
owl_subclass (mowl.ontology.normalize.GCI property)
owl_superclass (mowl.ontology.normalize.GCI property)
OWLAPIAdapter (class in mowl.owlapi.adapter)
OWLClasses (class in mowl.datasets)
OWLIndividuals (class in mowl.datasets)
OWLObjectProperties (class in mowl.datasets)
P
PathDataset (class in mowl.datasets)
PPIYeastDataset (class in mowl.datasets.builtin)
PPIYeastSlimDataset (class in mowl.datasets.builtin)
preprocess_ontology() (mowl.ontology.normalize.ELNormalizer method)
print_metrics() (mowl.evaluation.AxiomsRankBasedEvaluator method)
process_axiom() (mowl.projection.CategoricalProjector method)
project() (mowl.projection.CategoricalProjector method)
(mowl.projection.DL2VecProjector method)
(mowl.projection.OWL2VecStarProjector method)
(mowl.projection.TaxonomyProjector method)
(mowl.projection.TaxonomyWithRelationsProjector method)
projector (mowl.base_models.GraphModel attribute)
projector_factory() (in module mowl.projection)
R
RandomWalkModel (class in mowl.base_models)
RandomWalkPlusW2VModel (class in mowl.models)
RankBasedEvaluator (class in mowl.evaluation)
rel (mowl.projection.Edge attribute)
RemoteDataset (class in mowl.datasets)
right_subclass (mowl.ontology.normalize.GCI1 property)
S
savefig() (mowl.visualization.base.TSNE method)
score() (mowl.base_models.EmbeddingELModel method)
(mowl.base_models.Model method)
set_kge_method() (mowl.base_models.KGEModel method)
(mowl.models.GraphPlusPyKEENModel method)
set_projector() (mowl.base_models.GraphModel method)
set_w2v_model() (mowl.models.RandomWalkPlusW2VModel method)
(mowl.models.SyntacticPlusW2VModel method)
set_walker() (mowl.base_models.RandomWalkModel method)
show() (mowl.visualization.base.TSNE method)
src (mowl.projection.Edge attribute)
subclass (mowl.ontology.normalize.GCI0 property)
(mowl.ontology.normalize.GCI2 property)
superclass (mowl.ontology.normalize.GCI0 property)
(mowl.ontology.normalize.GCI1 property)
(mowl.ontology.normalize.GCI3 property)
SyntacticModel (class in mowl.base_models)
SyntacticPlusW2VModel (class in mowl.models)
T
tail_entities (mowl.models.ELBoxEmbeddings attribute)
(mowl.models.ELEmbeddings attribute)
TarFileDataset (class in mowl.datasets)
TaxonomyProjector (class in mowl.projection)
TaxonomyWithRelationsProjector (class in mowl.projection)
testing (mowl.datasets.Dataset attribute)
testing_dataloaders (mowl.base_models.EmbeddingELModel attribute)
testing_datasets (mowl.base_models.EmbeddingELModel attribute)
testing_set (mowl.models.ELBoxEmbeddings attribute)
(mowl.models.ELEmbeddings attribute)
to_str() (mowl.datasets.OWLClasses method)
(mowl.datasets.OWLIndividuals method)
(mowl.datasets.OWLObjectProperties method)
train() (mowl.base_models.Model method)
(mowl.base_models.RandomWalkModel method)
(mowl.base_models.SyntacticModel method)
(mowl.models.ELBoxEmbeddings method)
(mowl.models.ELBoxGDA method)
(mowl.models.ELBoxPPI method)
(mowl.models.ELEmbeddings method)
(mowl.models.ELEmGDA method)
(mowl.models.ELEmPPI method)
(mowl.models.GraphPlusPyKEENModel method)
(mowl.models.RandomWalkPlusW2VModel method)
(mowl.models.SyntacticPlusW2VModel method)
training_dataloaders (mowl.base_models.EmbeddingELModel attribute)
training_datasets (mowl.base_models.EmbeddingELModel attribute)
training_set (mowl.models.ELBoxEmbeddings attribute)
(mowl.models.ELEmbeddings attribute)
triples_factory (mowl.models.GraphPlusPyKEENModel attribute)
TSNE (class in mowl.visualization.base)
V
validation (mowl.datasets.Dataset attribute)
validation_dataloaders (mowl.base_models.EmbeddingELModel attribute)
validation_datasets (mowl.base_models.EmbeddingELModel attribute)
W
walk() (mowl.walking.DeepWalk method)
(mowl.walking.Node2Vec method)
(mowl.walking.WalkingModel method)
walker (mowl.base_models.RandomWalkModel attribute)
walker_factory() (in module mowl.walking)
WalkingModel (class in mowl.walking)
weight (mowl.projection.Edge attribute)
Z
zip() (mowl.projection.Edge static method)
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